Sequence Scanner Software v1.0, a free software enables you to view, edit, print and export sequence data generated using the Applied Biosystems Genetic Analyzers. Staden Package, a free genomic analysis package. Edit View, a DNA sequence assembly and analysis program for Mac OS. 4Peaks, supports Mac OS X 10.3 or above.
- UGENE open source and free bioinformatics tool Linux offers a common UI for integrating the platform with other bioinformatics applications. The software supports multiple formats for biological data available and you can retrieve it from remote locations. UGENE software sequence tool uses multicore GPUs and CPUs for the best performance.
- What is Sequence Analysis for Mac. Sequence Analysis is sequence editing, reverse complement, protein translation, ORF finding, secondary structure, composition, isoelectric point, primer design, pairwise comparison, publish layout and sequence reformatting. Fetches sequence entries directly from the NCBI via Accession number or GID.
Developer: Tom Hall
Supported platforms: Windows 95 and higher
Download: http://www.mbio.ncsu.edu/BioEdit/bioedit.html
Features
View Quality scores
No
View raw data
Yes
Assembly
Yes, but you have to manually align up each sequence and manually create a consensus sequence (which other programs are very good at).
Input file formats
ABI files (.abi and .ab1), FASTA, Genbank, Fasta, Phylip 3.2, Phylip 4, GCG, Clustal, and NBRF/PIR formats (a complete list can be found in the manual).
Output file formats
ABI files, text files, FASTA, Genbank, Fasta, Phylip 3.2, Phylip 4, GCG, Clustal, and NBRF/PIR formats (a complete list can be found in the manual).
Trimming
No trimming of low quality regions
Integrated Blast
Yes
Open multiple windows
Yes
Edit bases
Sequence Analysis Viewer
Yes
ABI limits (regions outside of clear range region are displayed in grey)
No
Other functions
- Reverse complement sequence
- Rudimentary phylogenetic tree viewer
- Plasmid drawing and restriction site mapping
- Translation
- ClustalW multiple sequence alignment
A complete list can be found on the BioEdit website
Cost
Free, but no longer maintained. The website seems to also be down these days. We have a copy of the installer if anyone wants to get a copy.
Comments
Dna Sequence Analysis Software Free Mac
BioEdit is free and provides many basic functions for protein and nucleic sequence editing, alignment, manipulation and analysis. The software works is no longer maintained. If you only need a trace viewer or want to do basic editing other free software options are better because they have more trimming options and display the quality values (phred scores). However, if you are looking for a free alignment program BioEdit might be right for you.
Dna Sequence Analysis Software
This software isfreeware or shareware, only for Macintosh computers! Clicking on thelinks below will start the downloadDNA Strider A bit dated but still great full featured sequence manipulation application for the mac. Freeware | Amplify v1.2 This software is for use in designing, analyzing, and simulating experiments involving the polymerase chain reaction (PCR). Given a template sequence and two primers, it will predict the possible outputs of the PCR, taking into account also weak matches to the target sequence. Freeware, thanks to Bill Engels | DNAid v1.8 As the author says, 'DNAid is not a heavyweight package which will run your 'just-sequenced gene' through every prediction or analysis algorithm in the known universe.' However, it is a very usefull application that allows to perform all the basic manipulations of DNA sequences such as restriction mapping, translation, reverse-complement and others. Freeware, thanks to Frédéric Dardel | MacPlasmap v1.8.2 It draws, stores, and prints high-quality circular plasmid maps with the data you specify. Fully functional. Shareware! Please read the enclosed documents before using the application | Primers! v1.0 Primers! is a very popular Macintosh utility to aid scientists in picking precisely the PCR oligos which fit their needs.Imput the target sequence and a range of selection, and Primers! will sugest the best PCR primers to amplify the selected region. Shareware at your discretion, thanks to Richard J. Resnick (Apple Pi Software). Please read the 'Read Me' file before using the application. Requires any Macintosh with a Color monitor and System 7 or beyond. | RasMac v2.6 RasMac is the Mac version of RasMol, a molecular graphics freeware program intended for the visualisation of proteins, nucleic acids and small molecules, written by Roger Sayle.You can downlod structural coordinates for a molecule of your choice -FOR INSTANCE HERE-and view, rotate and customize the look of the molecule right on your Mac even with no structural biology background (Thank you Roger Sayle!). Great for educational purposes. An excellent web site maintained by Eric Martz, for download and informations on RasMol and CHIME, a RasMol version designed as browser plug-in, can be found HERE. Before using RasMac, please read the enclosed 'Notice' file | SeqView v1.0.1 SeqVu is an alignment editor with analysis options that allows you to work quickly and simply with multiple sequences. It is ideal for manually correcting and obtaining publication-quality pictures from alignments produced using alignment software such as ClustalV or GCG pileup. Fully functional. Shareware. | Speakquencer v1.4 Speakquencer is a tool for entering and/or verifying nucleotide or amino acid sequence information. The application reads pre-existing sequences or speaks sequence as it is entered form the keyboard. Freeware, thanks to Christian Fritze | Swiss-PdbViewer 4.1 (Macos, Linux, Windows) Free Molecular visualization software by Nicolas Guex and Manuel C. Peitsch. Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyse several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds, angles and distances between atoms are easy to obtain thanks to the intuitive graphic and menu interface. For informations, tutorials, and to download the viewer for other platforms (PC, SGI, Linux) visit the Swiss PdbViewer official site at expasy. |
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Sequence Analysis Software Free Mac Software
Downloadother Molecular Biology applications from the MB Shortcuts/JustBio softwaresection